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Showing 1 to 12 of 90 entries
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Padé-Laplace method for the analysis of time-resolved fluorescence decay curves.

European biophysics journal : EBJ

Bajzer Z, Sharp JC, Sedarous SS, Prendergast FG.
PMID: 2323321
Eur Biophys J. 1990;18(2):101-15. doi: 10.1007/BF00183269.

The interpretation of fluorescence intensity decay times in terms of protein structure and dynamics depends on the accuracy and sensitivity of the methods used for data analysis. The are many methods available for the analysis of fluorescence decay data,...

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Bajzer Z, Sharp JC, Sedarous SS, et al. Padé-Laplace method for the analysis of time-resolved fluorescence decay curves. Eur Biophys J. 1990;18(2):101-15doi: 10.1007/BF00183269.
Bajzer, Z., Sharp, J. C., Sedarous, S. S., & Prendergast, F. G. (1990). Padé-Laplace method for the analysis of time-resolved fluorescence decay curves. European biophysics journal : EBJ, 18(2), 101-15. https://doi.org/10.1007/BF00183269
Bajzer, Z, et al. "Padé-Laplace method for the analysis of time-resolved fluorescence decay curves." European biophysics journal : EBJ vol. 18,2 (1990): 101-15. doi: https://doi.org/10.1007/BF00183269
Bajzer Z, Sharp JC, Sedarous SS, Prendergast FG. Padé-Laplace method for the analysis of time-resolved fluorescence decay curves. Eur Biophys J. 1990;18(2):101-15. doi: 10.1007/BF00183269. PMID: 2323321.
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Assembly of polymer/lipid composite films on solids based on hairy rod LB-films.

European biophysics journal : EBJ

Sigl H, Brink G, Seufert M, Schulz M, Wegner G, Sackmann E.
PMID: 21188573
Eur Biophys J. 1997;25(4):249-59. doi: 10.1007/s002490050037.

The present work deals with the assembly of multilayers or rod-like polymers with hydrophobic side chains (called hairy rods) and their potential application as ultrathin polymer cushions for the build-up of self healing supported membranes on various solids (Si/SiO(2)-wafer,...

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Sigl H, Brink G, Seufert M, et al. Assembly of polymer/lipid composite films on solids based on hairy rod LB-films. Eur Biophys J. 1997;25(4):249-59doi: 10.1007/s002490050037.
Sigl, H., Brink, G., Seufert, M., Schulz, M., Wegner, G., & Sackmann, E. (1997). Assembly of polymer/lipid composite films on solids based on hairy rod LB-films. European biophysics journal : EBJ, 25(4), 249-59. https://doi.org/10.1007/s002490050037
Sigl, H, et al. "Assembly of polymer/lipid composite films on solids based on hairy rod LB-films." European biophysics journal : EBJ vol. 25,4 (1997): 249-59. doi: https://doi.org/10.1007/s002490050037
Sigl H, Brink G, Seufert M, Schulz M, Wegner G, Sackmann E. Assembly of polymer/lipid composite films on solids based on hairy rod LB-films. Eur Biophys J. 1997;25(4):249-59. doi: 10.1007/s002490050037. PMID: 21188573.
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RETRACTED ARTICLE: Human recombinant α-crystallins: temperature dependence of diffusion coefficients.

European biophysics journal : EBJ

[No authors listed]
PMID: 23306588
Eur Biophys J. 2013 May;42(5):417. doi: 10.1007/s00249-012-0882-9. Epub 2013 Jan 11.

No abstract available.

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RETRACTED ARTICLE: Human recombinant α-crystallins: temperature dependence of diffusion coefficients. Eur Biophys J. 2013;42(5):417doi: 10.1007/s00249-012-0882-9.
(2013). RETRACTED ARTICLE: Human recombinant α-crystallins: temperature dependence of diffusion coefficients. European biophysics journal : EBJ, 42(5), 417. https://doi.org/10.1007/s00249-012-0882-9
"RETRACTED ARTICLE: Human recombinant α-crystallins: temperature dependence of diffusion coefficients." European biophysics journal : EBJ vol. 42,5 (2013): 417. doi: https://doi.org/10.1007/s00249-012-0882-9
RETRACTED ARTICLE: Human recombinant α-crystallins: temperature dependence of diffusion coefficients. Eur Biophys J. 2013 May;42(5):417. doi: 10.1007/s00249-012-0882-9. Epub 2013 Jan 11. PMID: 23306588.
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Erratum to: One-stage immobilization of the microalga Porphyridium purpureum using a biocompatible silica precursor and study of the fluorescence of its pigments.

European biophysics journal : EBJ

Voznesenskiy SS, Popik AY, Gamayunov EL, Orlova TY, Markina ZV, Postnova IV, Shchipunov YA.
PMID: 28567605
Eur Biophys J. 2018 Jan;47(1):87. doi: 10.1007/s00249-017-1225-7.

No abstract available.

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Voznesenskiy SS, Popik AY, Gamayunov EL, et al. Erratum to: One-stage immobilization of the microalga Porphyridium purpureum using a biocompatible silica precursor and study of the fluorescence of its pigments. Eur Biophys J. 2018;47(1):87doi: 10.1007/s00249-017-1225-7.
Voznesenskiy, S. S., Popik, A. Y., Gamayunov, E. L., Orlova, T. Y., Markina, Z. V., Postnova, I. V., & Shchipunov, Y. A. (2018). Erratum to: One-stage immobilization of the microalga Porphyridium purpureum using a biocompatible silica precursor and study of the fluorescence of its pigments. European biophysics journal : EBJ, 47(1), 87. https://doi.org/10.1007/s00249-017-1225-7
Voznesenskiy, S S, et al. "Erratum to: One-stage immobilization of the microalga Porphyridium purpureum using a biocompatible silica precursor and study of the fluorescence of its pigments." European biophysics journal : EBJ vol. 47,1 (2018): 87. doi: https://doi.org/10.1007/s00249-017-1225-7
Voznesenskiy SS, Popik AY, Gamayunov EL, Orlova TY, Markina ZV, Postnova IV, Shchipunov YA. Erratum to: One-stage immobilization of the microalga Porphyridium purpureum using a biocompatible silica precursor and study of the fluorescence of its pigments. Eur Biophys J. 2018 Jan;47(1):87. doi: 10.1007/s00249-017-1225-7. PMID: 28567605.
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Correction to: Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles.

European biophysics journal : EBJ

Ahamed MK, Karal MAS, Ahmed M, Ahammed S.
PMID: 32591856
Eur Biophys J. 2020 Jul;49(5):383. doi: 10.1007/s00249-020-01444-x.

Due to wrong coding usage, the.

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Ahamed MK, Karal MAS, Ahmed M, et al. Correction to: Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles. Eur Biophys J. 2020;49(5):383doi: 10.1007/s00249-020-01444-x.
Ahamed, M. K., Karal, M. A. S., Ahmed, M., & Ahammed, S. (2020). Correction to: Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles. European biophysics journal : EBJ, 49(5), 383. https://doi.org/10.1007/s00249-020-01444-x
Ahamed, Md Kabir, et al. "Correction to: Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles." European biophysics journal : EBJ vol. 49,5 (2020): 383. doi: https://doi.org/10.1007/s00249-020-01444-x
Ahamed MK, Karal MAS, Ahmed M, Ahammed S. Correction to: Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles. Eur Biophys J. 2020 Jul;49(5):383. doi: 10.1007/s00249-020-01444-x. PMID: 32591856.
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Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases.

European biophysics journal : EBJ

Baronas D, Dudutienė V, Paketurytė V, Kairys V, Smirnov A, Juozapaitienė V, Vaškevičius A, Manakova E, Gražulis S, Zubrienė A, Matulis D.
PMID: 34328515
Eur Biophys J. 2021 Oct;50(7):993-1011. doi: 10.1007/s00249-021-01561-1. Epub 2021 Jul 30.

Zinc-containing metalloenzyme carbonic anhydrase (CA) binds primary sulfonamides with extremely high, up to picomolar, affinity by forming a coordination bond between the negatively charged amino group and the zinc ion and making hydrogen bonds and hydrophobic contacts with other...

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Baronas D, Dudutienė V, Paketurytė V, et al. Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases. Eur Biophys J. 2021;50(7):993-1011doi: 10.1007/s00249-021-01561-1.
Baronas, D., Dudutienė, V., Paketurytė, V., Kairys, V., Smirnov, A., Juozapaitienė, V., Vaškevičius, A., Manakova, E., Gražulis, S., Zubrienė, A., & Matulis, D. (2021). Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases. European biophysics journal : EBJ, 50(7), 993-1011. https://doi.org/10.1007/s00249-021-01561-1
Baronas, Denis, et al. "Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases." European biophysics journal : EBJ vol. 50,7 (2021): 993-1011. doi: https://doi.org/10.1007/s00249-021-01561-1
Baronas D, Dudutienė V, Paketurytė V, Kairys V, Smirnov A, Juozapaitienė V, Vaškevičius A, Manakova E, Gražulis S, Zubrienė A, Matulis D. Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases. Eur Biophys J. 2021 Oct;50(7):993-1011. doi: 10.1007/s00249-021-01561-1. Epub 2021 Jul 30. PMID: 34328515.
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Effect of setting data collection parameters on the reliability of a circular dichroism spectrum.

European biophysics journal : EBJ

Sousa VK, Pedro JAF, Kumagai PS, Lopes JLS.
PMID: 33538870
Eur Biophys J. 2021 Jul;50(5):687-697. doi: 10.1007/s00249-021-01499-4. Epub 2021 Feb 04.

Circular dichroism (CD) spectroscopy is a well-established biophysical technique used to investigate the structure of molecules. The analysis of a protein CD spectrum depends on the quality of the original CD data, which can be affected by the sample...

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Sousa VK, Pedro JAF, Kumagai PS, et al. Effect of setting data collection parameters on the reliability of a circular dichroism spectrum. Eur Biophys J. 2021;50(5):687-697doi: 10.1007/s00249-021-01499-4.
Sousa, V. K., Pedro, J. A. F., Kumagai, P. S., & Lopes, J. L. S. (2021). Effect of setting data collection parameters on the reliability of a circular dichroism spectrum. European biophysics journal : EBJ, 50(5), 687-697. https://doi.org/10.1007/s00249-021-01499-4
Sousa, Victor K, et al. "Effect of setting data collection parameters on the reliability of a circular dichroism spectrum." European biophysics journal : EBJ vol. 50,5 (2021): 687-697. doi: https://doi.org/10.1007/s00249-021-01499-4
Sousa VK, Pedro JAF, Kumagai PS, Lopes JLS. Effect of setting data collection parameters on the reliability of a circular dichroism spectrum. Eur Biophys J. 2021 Jul;50(5):687-697. doi: 10.1007/s00249-021-01499-4. Epub 2021 Feb 04. PMID: 33538870.
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Protein formulation through automated screening of pH and buffer conditions, using the Robotein® high throughput facility.

European biophysics journal : EBJ

Kellner R, Malempré R, Vandenameele J, Brans A, Hennen AF, Rochus N, Di Paolo A, Vandevenne M, Matagne A.
PMID: 33611612
Eur Biophys J. 2021 May;50(3):473-490. doi: 10.1007/s00249-021-01510-y. Epub 2021 Feb 20.

Among various factors, the direct environment (e.g. pH, buffer components, salts, additives, etc.…) is known to have a crucial effect on both the stability and activity of proteins. In particular, proper buffer and pH conditions can improve their stability...

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Kellner R, Malempré R, Vandenameele J, et al. Protein formulation through automated screening of pH and buffer conditions, using the Robotein® high throughput facility. Eur Biophys J. 2021;50(3):473-490doi: 10.1007/s00249-021-01510-y.
Kellner, R., Malempré, R., Vandenameele, J., Brans, A., Hennen, A. F., Rochus, N., Di Paolo, A., Vandevenne, M., & Matagne, A. (2021). Protein formulation through automated screening of pH and buffer conditions, using the Robotein® high throughput facility. European biophysics journal : EBJ, 50(3), 473-490. https://doi.org/10.1007/s00249-021-01510-y
Kellner, Ruth, et al. "Protein formulation through automated screening of pH and buffer conditions, using the Robotein® high throughput facility." European biophysics journal : EBJ vol. 50,3 (2021): 473-490. doi: https://doi.org/10.1007/s00249-021-01510-y
Kellner R, Malempré R, Vandenameele J, Brans A, Hennen AF, Rochus N, Di Paolo A, Vandevenne M, Matagne A. Protein formulation through automated screening of pH and buffer conditions, using the Robotein® high throughput facility. Eur Biophys J. 2021 May;50(3):473-490. doi: 10.1007/s00249-021-01510-y. Epub 2021 Feb 20. PMID: 33611612.
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Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases.

European biophysics journal : EBJ

Mirdha L, Chakraborty H.
PMID: 33564930
Eur Biophys J. 2021 Jul;50(5):671-685. doi: 10.1007/s00249-021-01505-9. Epub 2021 Feb 09.

Intrinsically disordered proteins (IDPs) have captured attention in the last couple of decades due to their functional roles despite a lack of specific structure. Moreover, these proteins are found to be highly aggregation prone depending on the mutational and...

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Mirdha L, Chakraborty H. Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases. Eur Biophys J. 2021;50(5):671-685doi: 10.1007/s00249-021-01505-9.
Mirdha, L., & Chakraborty, H. (2021). Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases. European biophysics journal : EBJ, 50(5), 671-685. https://doi.org/10.1007/s00249-021-01505-9
Mirdha, Lipika, and Chakraborty, Hirak. "Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases." European biophysics journal : EBJ vol. 50,5 (2021): 671-685. doi: https://doi.org/10.1007/s00249-021-01505-9
Mirdha L, Chakraborty H. Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases. Eur Biophys J. 2021 Jul;50(5):671-685. doi: 10.1007/s00249-021-01505-9. Epub 2021 Feb 09. PMID: 33564930.
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A method to assess the robustness of complex mathematical models used for quantitative interpretation of experimental data by nonlinear regression analysis: application to high-affinity binding models.

European biophysics journal : EBJ

Vanhove M.
PMID: 34142204
Eur Biophys J. 2021 Oct;50(7):1045-1054. doi: 10.1007/s00249-021-01556-y. Epub 2021 Jun 17.

Nonlinear regression is widely used to fit experimental data to a specific mathematical model to extract numerical values for parameters representing the studied process. However, assessing the degree of precision that can be expected from such an analysis for...

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Vanhove M. A method to assess the robustness of complex mathematical models used for quantitative interpretation of experimental data by nonlinear regression analysis: application to high-affinity binding models. Eur Biophys J. 2021;50(7):1045-1054doi: 10.1007/s00249-021-01556-y.
Vanhove, M. (2021). A method to assess the robustness of complex mathematical models used for quantitative interpretation of experimental data by nonlinear regression analysis: application to high-affinity binding models. European biophysics journal : EBJ, 50(7), 1045-1054. https://doi.org/10.1007/s00249-021-01556-y
Vanhove, Marc. "A method to assess the robustness of complex mathematical models used for quantitative interpretation of experimental data by nonlinear regression analysis: application to high-affinity binding models." European biophysics journal : EBJ vol. 50,7 (2021): 1045-1054. doi: https://doi.org/10.1007/s00249-021-01556-y
Vanhove M. A method to assess the robustness of complex mathematical models used for quantitative interpretation of experimental data by nonlinear regression analysis: application to high-affinity binding models. Eur Biophys J. 2021 Oct;50(7):1045-1054. doi: 10.1007/s00249-021-01556-y. Epub 2021 Jun 17. PMID: 34142204.
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Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers.

European biophysics journal : EBJ

Kavousi S, Novak BR, Tong X, Moldovan D.
PMID: 34052860
Eur Biophys J. 2021 Sep;50(6):889-903. doi: 10.1007/s00249-021-01548-y. Epub 2021 May 29.

Using molecular dynamics simulations, we investigate the interaction of α-tocopherol (α-toc) with dipalmitoylphosphatidylcholine (DPPC), dimyristoylphosphatidylcholine (DMPC), palmitoyloleoylphosphatidylcholine (POPC), and palmitoyloleoylphosphatidylethanolamine (POPE) lipid bilayers. The goal is to develop a better understanding of the positioning and orientation of α-toc inside...

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Kavousi S, Novak BR, Tong X, et al. Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers. Eur Biophys J. 2021;50(6):889-903doi: 10.1007/s00249-021-01548-y.
Kavousi, S., Novak, B. R., Tong, X., & Moldovan, D. (2021). Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers. European biophysics journal : EBJ, 50(6), 889-903. https://doi.org/10.1007/s00249-021-01548-y
Kavousi, Sepideh, et al. "Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers." European biophysics journal : EBJ vol. 50,6 (2021): 889-903. doi: https://doi.org/10.1007/s00249-021-01548-y
Kavousi S, Novak BR, Tong X, Moldovan D. Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers. Eur Biophys J. 2021 Sep;50(6):889-903. doi: 10.1007/s00249-021-01548-y. Epub 2021 May 29. PMID: 34052860.
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Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors.

European biophysics journal : EBJ

Paketurytė V, Petrauskas V, Zubrienė A, Abian O, Bastos M, Chen WY, Moreno MJ, Krainer G, Linkuvienė V, Sedivy A, Velazquez-Campoy A, Williams MA, Matulis D.
PMID: 33837826
Eur Biophys J. 2021 May;50(3):661-670. doi: 10.1007/s00249-021-01518-4. Epub 2021 Apr 10.

Equilibrium binding constants (K

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Paketurytė V, Petrauskas V, Zubrienė A, et al. Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors. Eur Biophys J. 2021;50(3):661-670doi: 10.1007/s00249-021-01518-4.
Paketurytė, V., Petrauskas, V., Zubrienė, A., Abian, O., Bastos, M., Chen, W. Y., Moreno, M. J., Krainer, G., Linkuvienė, V., Sedivy, A., Velazquez-Campoy, A., Williams, M. A., & Matulis, D. (2021). Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors. European biophysics journal : EBJ, 50(3), 661-670. https://doi.org/10.1007/s00249-021-01518-4
Paketurytė, Vaida, et al. "Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors." European biophysics journal : EBJ vol. 50,3 (2021): 661-670. doi: https://doi.org/10.1007/s00249-021-01518-4
Paketurytė V, Petrauskas V, Zubrienė A, Abian O, Bastos M, Chen WY, Moreno MJ, Krainer G, Linkuvienė V, Sedivy A, Velazquez-Campoy A, Williams MA, Matulis D. Uncertainty in protein-ligand binding constants: asymmetric confidence intervals versus standard errors. Eur Biophys J. 2021 May;50(3):661-670. doi: 10.1007/s00249-021-01518-4. Epub 2021 Apr 10. PMID: 33837826.
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Showing 1 to 12 of 90 entries